Pumpkin Cream Cheese Muffins Recipe
If you’re craving a cozy treat that tastes like autumn bliss in every bite, these Pumpkin Cream Cheese Muffins are your new best friend. Imagine tender, moist pumpkin muffins swirled with a luscious cream cheese filling that adds a dreamy tangy creaminess to every mouthful. Perfectly spiced with classic pumpkin spice, these muffins are a celebration of fall flavors and the kind of recipe you’ll want to make over and over again. Whether for breakfast, an afternoon snack, or dessert, these muffins bring warmth and joy to the table like no other.

Ingredients You’ll Need
This recipe uses simple, pantry-friendly ingredients that come together to create a flavor-packed and wonderfully textured muffin. Each ingredient plays a vital role—from the pumpkin purée that keeps the muffins moist and earthy to the cream cheese that swirls in a silky richness. The pumpkin spice adds that signature warmth, tying everything together beautifully.
- All-purpose flour: The base of your muffin, providing structure and that perfect crumb.
- Pumpkin spice: A cozy blend that brings essential autumn warmth and flavor.
- Baking soda: Helps the muffins rise and stay tender.
- Salt: Balances sweetness and enhances all the flavors.
- Pumpkin purée: The star ingredient, delivering moisture, color, and that unmistakable autumn taste.
- Granulated sugar: Sweetens the batter without overpowering.
- Brown sugar: Adds moistness and a subtle molasses depth.
- Eggs: Bind everything together and add richness.
- Vegetable oil or melted butter: Ensures the muffins stay tender and moist.
- Vanilla extract: Adds a sweet, aromatic finish.
- Cream cheese (for the swirl): Creates a creamy, tangy contrast that elevates these muffins.
- Additional sugar and egg yolk for cream cheese swirl: Sweeten and stabilize the cream cheese filling, making it wonderfully smooth.
How to Make Pumpkin Cream Cheese Muffins
Step 1: Preheat and Prepare
Start by preheating your oven to 375°F and lining your muffin tins with paper baking cups. This gets everything ready so you’re set to mix your ingredients without delay—early preparation makes baking so much more enjoyable!
Step 2: Mix Dry Ingredients
In a medium bowl, whisk together your flour, pumpkin spice, baking soda, and salt until well combined. This dry mixture ensures that your muffins have an even spice distribution and rise beautifully.
Step 3: Combine Wet Ingredients
In a large bowl, blend the pumpkin purée with granulated sugar and brown sugar until smooth. Beat in the eggs, vegetable oil, and vanilla extract. This mixture will be thick, luscious, and bursting with pumpkin goodness.
Step 4: Bring It All Together
Gradually whisk the dry ingredients into the wet pumpkin mixture until just combined. Avoid over-mixing; a few lumps are absolutely okay! Overworking the batter can lead to tough muffins, so be gentle.
Step 5: Prepare the Cream Cheese Swirl
In a separate bowl, beat your cream cheese until smooth, then mix in sugar, egg yolk, and vanilla extract until silky and fluffy. This swirl is the secret to adding that lovely creamy, tangy surprise inside each muffin.
Step 6: Assemble and Swirl
Fill each muffin cup about three-quarters full with the pumpkin batter. Dollop approximately one tablespoon of the cream cheese mixture onto each muffin and use a toothpick to swirl it gently through the batter. Don’t worry if it looks rustic; the marbled effect is part of the charm!
Step 7: Bake to Perfection
Bake the muffins for 18 to 20 minutes, or until a toothpick inserted into the pumpkin portion comes out clean with just a few moist crumbs. Let the muffins cool a bit before serving to enjoy their full flavor.
How to Serve Pumpkin Cream Cheese Muffins

Garnishes
While these muffins are stunning on their own, you can dress them up with a light dusting of powdered sugar or a sprinkle of extra pumpkin spice on top. A drizzle of honey or a dollop of whipped cream can add an indulgent touch too.
Side Dishes
These muffins pair beautifully with a warm cup of coffee or spiced chai tea for a perfect breakfast combo. For a heartier brunch, serve alongside scrambled eggs or a fresh fruit salad to balance the sweetness.
Creative Ways to Present
Try serving your Pumpkin Cream Cheese Muffins stacked on a rustic wooden board with small bowls of cream cheese frosting and maple syrup for dipping. You can also slice them in half and toast lightly for a warm treat that melts the cream cheese swirl even more.
Make Ahead and Storage
Storing Leftovers
Store any leftover Pumpkin Cream Cheese Muffins in an airtight container in the refrigerator. They will stay fresh and tasty for up to 5 days. To enjoy, bring them to room temperature or eat chilled—both ways showcase the lusciousness of the cream cheese filling wonderfully.
Freezing
You can freeze these muffins to enjoy later! Wrap each muffin individually in plastic wrap and place them in a freezer bag. They’ll keep well for up to 3 months. When ready to eat, thaw overnight in the fridge or for a few hours at room temperature.
Reheating
For reheating, pop the muffin into the microwave for about 20 seconds until warm, or warm in a preheated oven at 325°F for 10 minutes. This refreshes the texture and brings back the cozy pumpkin flavor perfectly.
FAQs
Can I use fresh pumpkin instead of canned pumpkin purée?
Yes! If you have fresh pumpkin, roast it until soft and mash it well. Use the same quantity as canned purée, but keep in mind fresh pumpkin might be a bit wetter, so you may want to adjust your flour slightly.
What can I substitute if I don’t have pumpkin spice?
No pumpkin spice? No problem! Mix your own using cinnamon, ginger, cloves, nutmeg, and allspice. This way, you control the flavors and can make the blend as strong or mild as you like.
Are these muffins suitable for freezing after baking?
Absolutely! These Pumpkin Cream Cheese Muffins freeze beautifully when wrapped properly. Just thaw and reheat before enjoying a fresh-tasting muffin any day you want.
Can I make these muffins dairy-free?
To make a dairy-free version, substitute the cream cheese with a dairy-free variety and use a plant-based oil instead of butter if preferred. The texture will be slightly different but still delicious!
How do I prevent the cream cheese swirl from sinking to the bottom?
Swirling the cream cheese on top of the batter just before baking helps keep it nicely marbled and prevents sinking. Don’t overmix once combined; delicate swirling preserves the visual and taste contrast perfectly.
Final Thoughts
Once you try these Pumpkin Cream Cheese Muffins, I guarantee they’ll become a cherished go-to recipe for cozy mornings, festive gatherings, or whenever you want a little slice of fall magic. Their perfect balance of spice, sweetness, and creamy filling makes them utterly irresistible. So grab your mixing bowl and let’s get baking—you won’t regret filling your kitchen with the warm aroma of these delightful muffins!
PrintPumpkin Cream Cheese Muffins Recipe
Delight in the perfect fall treat with these Pumpkin Cream Cheese Muffins. Moist pumpkin-infused muffins are swirled with a rich, creamy vanilla cream cheese mixture for a flavorful and tender bite. Ideal for breakfast, dessert, or an afternoon snack, these muffins combine warm spices and a luscious cream cheese swirl for a comforting seasonal delight.
- Prep Time: 15 minutes
- Cook Time: 18-20 minutes
- Total Time: 35 minutes
- Yield: 12 muffins 1x
- Category: Breakfast, Dessert, Snack
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
Muffin Ingredients
- 1 ¾ cups all purpose flour
- 1 tablespoon pumpkin spice
- 1 teaspoon baking soda
- ½ teaspoon salt
- 1 (15 oz) can pumpkin puree
- 1 cup granulated sugar
- ½ cup packed brown sugar
- 2 large eggs
- ½ cup vegetable oil or melted and cooled butter
- 1 tablespoon vanilla extract
Cream Cheese Swirl Ingredients
- 8 oz cream cheese, room temperature
- ¼ cup granulated sugar
- 1 large egg yolk, room temperature
- 2 teaspoons vanilla extract
Instructions
- Preheat and Prepare: Preheat your oven to 375°F (190°C). Line a muffin pan with paper baking cups and set aside.
- Mix Dry Ingredients: In a medium bowl, whisk together the all-purpose flour, pumpkin spice, baking soda, and salt until well combined. This ensures even distribution of leavening agents and spices.
- Combine Wet Ingredients: In a large bowl, whisk the pumpkin puree, granulated sugar, and brown sugar until smooth. Add the eggs, vegetable oil (or melted butter), and vanilla extract, mixing well.
- Incorporate Dry Ingredients: Slowly add the flour mixture to the wet ingredients, whisking gently until no lumps remain. Avoid over-mixing to keep the muffins tender. Fill each muffin cup about ¾ full with the batter.
- Prepare the Cream Cheese Swirl: In a separate bowl, beat the cream cheese until smooth and creamy. Add granulated sugar, egg yolk, and vanilla extract, then beat until well combined and smooth.
- Top and Swirl: Spoon about 1 tablespoon of the cream cheese mixture onto the center of each muffin batter portion. Use a toothpick or a small knife to gently swirl the cream cheese into the pumpkin batter, creating marbled swirls.
- Bake: Bake the muffins for 18-20 minutes or until a toothpick inserted into the pumpkin batter comes out clean or with just a few moist crumbs. Do not over-bake.
- Cool and Serve: Allow the muffins to cool in the pan for 10 minutes before removing them. Serve warm or cool completely before storing.
Notes
- Storage: Refrigerate muffins in an airtight container for up to 5 days. For best flavor, bring to room temperature or serve slightly chilled.
- No Pumpkin Spice?: Create your own blend with 4 tsp cinnamon, 2 tsp ginger, 1 tsp cloves, ½ tsp nutmeg, and ½ tsp allspice.
- Baking Variation: Use the same batter to bake a loaf instead of muffins for pumpkin cream cheese bread.
- Mixing Tip: Avoid over-mixing the batter to prevent tough, dry muffins caused by gluten overdevelopment.
Nutrition
- Serving Size: 1 muffin
- Calories: 241
- Sugar: 21g
- Sodium: 176mg
- Fat: 11g
- Saturated Fat: 4g
- Unsaturated Fat: 7g
- Trans Fat: 0.04g
- Carbohydrates: 32g
- Fiber: 1g
- Protein: 3g
- Cholesterol: 42mg
Keywords: pumpkin muffins, cream cheese swirl, fall muffin recipe, pumpkin dessert, breakfast muffins